Acidithrix ferrooxidans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Acidimicrobiia; o__Acidimicrobiales; f__Acidimicrobiaceae; g__Acidithrix; s__Acidithrix ferrooxidans
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Acidimicrobiia; o__Acidimicrobiales; f__Acidimicrobiaceae; g__Acidithrix; s__Acidithrix ferrooxidans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Acidimicrobiia; o__Acidimicrobiales; f__Acidimicrobiaceae; g__Acidithrix; s__Acidithrix ferrooxidans
NCBI Strain Identifiers Py-F3
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.29%
CheckM Contamination 2.14%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 183
N50 Contigs 39,355 bp
Longest Contig 188,300 bp
Scaffold Count 183
N50 Scaffolds 39,355 bp
Longest Scaffold 188,300 bp
Genome Size 4,019,867 bp
Protein Count 3,789
Coding Density 75.82%
GC Percentage 47.75%
Ambiguous Bases 55
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM94929v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03301760
Country United Kingdom: Wales
Date 2015-3-6
Genbank Assembly Accession GCA_000949295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mine water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,625
Refseq Category representative genome
Seq Rel Date 2015/03/06
Spanned Gaps 0
Species Taxid 1280514
SSU Count 4
Submitter Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory
Taxid 1280514
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JXYS00000000.1