Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers OLC-1555
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 11.11
5S Count 6
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 224
N50 Contigs 57,974 bp
Longest Contig 202,222 bp
Scaffold Count 224
N50 Scaffolds 57,974 bp
Longest Scaffold 202,222 bp
Genome Size 5,071,829 bp
Protein Count 4,996
Coding Density 87.72%
GC Percentage 50.91%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM94867v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03292328
Country Canada
Date 2015-3-6
Genbank Assembly Accession GCA_000948675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,408
Refseq Category na
Seq Rel Date 2015/03/06
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Canadian Food Inspection Agency
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXVP00000000.1