Streptococcus suis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers E00F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294495.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 66
N50 Contigs 92,798 bp
Longest Contig 279,726 bp
Scaffold Count 56
N50 Scaffolds 170,263 bp
Longest Scaffold 368,327 bp
Genome Size 2,088,748 bp
Protein Count 2,022
Coding Density 88.02%
GC Percentage 41.19%
Ambiguous Bases N/A
GTDB representative GCA_000294495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Velvet_assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3233806
Country Viet Nam
Date 2015-2-13
Genbank Assembly Accession GCA_000945295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Brain
Latitude Longitude None
Molecule Count N/A
CDS Count 2,069
Refseq Category na
Seq Rel Date 2015/02/13
Spanned Gaps 10
Species Taxid 1307
SSU Count 2
Submitter UNIVERSITY OF CAMBRIDGE
Taxid 1307
Total Gap Length 418
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDTT00000000.1