Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni; sb__Campylobacter jejuni subsp. jejuni
NCBI Strain Identifiers P10-2209
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 33.33
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 63
N50 Contigs 96,955 bp
Longest Contig 200,111 bp
Scaffold Count 61
N50 Scaffolds 96,955 bp
Longest Scaffold 200,111 bp
Genome Size 1,655,384 bp
Protein Count 1,720
Coding Density 93.57%
GC Percentage 30.63%
Ambiguous Bases 38
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM94338v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03299123
Country Japan: Tokachi area; Obihiro
Date 2015-3-4
Genbank Assembly Accession GCA_000943385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 43.41 N 142.69 E
Molecule Count N/A
CDS Count 1,692
Refseq Category na
Seq Rel Date 2015/03/04
Spanned Gaps 2
Species Taxid 197
SSU Count 1
Submitter Laboratory of Food microbiology and Immunology
Taxid 32022
Total Gap Length 113
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYEC00000000.1