Streptococcus suis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers E24
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294495.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 64
N50 Contigs 91,194 bp
Longest Contig 279,793 bp
Scaffold Count 54
N50 Scaffolds 170,361 bp
Longest Scaffold 368,313 bp
Genome Size 2,036,280 bp
Protein Count 1,951
Coding Density 88.26%
GC Percentage 41.18%
Ambiguous Bases N/A
GTDB representative GCA_000294495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Velvet_assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3233825
Country Viet Nam
Date 2015-2-13
Genbank Assembly Accession GCA_000942435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Brain
Latitude Longitude None
Molecule Count N/A
CDS Count 1,999
Refseq Category na
Seq Rel Date 2015/02/13
Spanned Gaps 10
Species Taxid 1307
SSU Count 1
Submitter UNIVERSITY OF CAMBRIDGE
Taxid 1307
Total Gap Length 373
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDUK00000000.1