Streptococcus suis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers LS7W
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294495.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 123
N50 Contigs 60,110 bp
Longest Contig 197,268 bp
Scaffold Count 123
N50 Scaffolds 60,110 bp
Longest Scaffold 197,268 bp
Genome Size 2,122,351 bp
Protein Count 2,122
Coding Density 88.42%
GC Percentage 41.12%
Ambiguous Bases N/A
GTDB representative GCA_000294495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Velvet_assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3233946
Country United Kingdom
Date 2015-2-18
Genbank Assembly Accession GCA_000942135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Tonsil
Latitude Longitude None
Molecule Count N/A
CDS Count 2,134
Refseq Category na
Seq Rel Date 2015/02/18
Spanned Gaps 0
Species Taxid 1307
SSU Count 1
Submitter UNIVERSITY OF CAMBRIDGE
Taxid 1307
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CEHR00000000.1