Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers FHI20
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 2
23S Count 5
tRNA Count 19
Contig Count 50
N50 Contigs 326,437 bp
Longest Contig 1,200,133 bp
Scaffold Count 50
N50 Scaffolds 326,437 bp
Longest Scaffold 1,200,133 bp
Genome Size 5,498,438 bp
Protein Count 5,431
Coding Density 87.19%
GC Percentage 50.47%
Ambiguous Bases 45
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name FHI20
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593905
Country Norway
Date 2014-09-02
Genbank Assembly Accession GCA_000940115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,909
Refseq Category na
Seq Rel Date 2014/09/02
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter NTNU
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None