Streptococcus suis_W
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis_W
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers S12X
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004922915.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 78
N50 Contigs 186,458 bp
Longest Contig 436,809 bp
Scaffold Count 78
N50 Scaffolds 186,458 bp
Longest Scaffold 436,809 bp
Genome Size 2,144,688 bp
Protein Count 2,020
Coding Density 88.61%
GC Percentage 41.33%
Ambiguous Bases N/A
GTDB representative GCA_004922915.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Velvet_assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3233997
Country United Kingdom
Date 2015-2-18
Genbank Assembly Accession GCA_000938795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Brain
Latitude Longitude None
Molecule Count N/A
CDS Count 2,030
Refseq Category na
Seq Rel Date 2015/02/18
Spanned Gaps 0
Species Taxid 1307
SSU Count 1
Submitter UNIVERSITY OF CAMBRIDGE
Taxid 1307
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CEJD00000000.1