Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. viburni
NCBI Strain Identifiers CFBP 1702
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 265
N50 Contigs 98,078 bp
Longest Contig 266,102 bp
Scaffold Count 265
N50 Scaffolds 98,078 bp
Longest Scaffold 266,102 bp
Genome Size 6,492,303 bp
Protein Count 6,058
Coding Density 87.25%
GC Percentage 58.60%
Ambiguous Bases 34
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name PSVCFBP1702-G1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03328953
Country USA
Date 2015-3-2
Genbank Assembly Accession GCA_000935765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,196
Refseq Category na
Seq Rel Date 2015/03/02
Spanned Gaps 0
Species Taxid 251701
SSU Count 1
Submitter INRA
Taxid 251703
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master JYHK00000000.1