Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. maculicola
NCBI Strain Identifiers CFBP 1657
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 139
N50 Contigs 122,411 bp
Longest Contig 343,485 bp
Scaffold Count 138
N50 Scaffolds 122,411 bp
Longest Scaffold 343,485 bp
Genome Size 6,058,456 bp
Protein Count 5,366
Coding Density 87.84%
GC Percentage 58.43%
Ambiguous Bases 4
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PSMCFBP1657-G1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03328955
Country New Zealand
Date 2015-3-2
Genbank Assembly Accession GCA_000935725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,597
Refseq Category na
Seq Rel Date 2015/03/02
Spanned Gaps 1
Species Taxid 251701
SSU Count 1
Submitter INRA
Taxid 59511
Total Gap Length 100
Translation Table 11
tRNA Count (total) 55
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master JYHH00000000.1