Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers B144-c1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 20.0
5S Count 3
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 335
N50 Contigs 63,378 bp
Longest Contig 211,938 bp
Scaffold Count 335
N50 Scaffolds 63,378 bp
Longest Scaffold 211,938 bp
Genome Size 4,902,430 bp
Protein Count 4,774
Coding Density 87.72%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM93543v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03333573
Country USA: Wisconsin
Date 2015-3-2
Genbank Assembly Accession GCA_000935435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,197
Refseq Category na
Seq Rel Date 2015/03/02
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter CDC
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYID00000000.1