Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers 10-4247
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 85
N50 Contigs 462,063 bp
Longest Contig 1,083,362 bp
Scaffold Count 85
N50 Scaffolds 462,063 bp
Longest Scaffold 1,083,362 bp
Genome Size 5,124,152 bp
Protein Count 4,666
Coding Density 86.73%
GC Percentage 45.27%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM87866v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03287760
Country Canada: British Columbia
Date 2015-2-20
Genbank Assembly Accession GCA_000878665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Clinical sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,864
Refseq Category na
Seq Rel Date 2015/02/20
Spanned Gaps 0
Species Taxid 670
SSU Count 16
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 124
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXVE00000000.1