Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus 97-10290
NCBI Strain Identifiers 97-10290
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 61
N50 Contigs 236,714 bp
Longest Contig 480,672 bp
Scaffold Count 61
N50 Scaffolds 236,714 bp
Longest Scaffold 480,672 bp
Genome Size 5,103,858 bp
Protein Count 4,652
Coding Density 86.88%
GC Percentage 45.26%
Ambiguous Bases 6
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM87742v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02204316
Country USA: Washington
Date 2015-2-18
Genbank Assembly Accession GCA_000877425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,840
Refseq Category na
Seq Rel Date 2015/02/18
Spanned Gaps 0
Species Taxid 670
SSU Count 1
Submitter NOAA Northwest Fisheries Science Center
Taxid 1288780
Total Gap Length 0
Translation Table 11
tRNA Count (total) 104
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOOU00000000.1