Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus VP551
NCBI Strain Identifiers VP551
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 58
N50 Contigs 260,061 bp
Longest Contig 542,555 bp
Scaffold Count 58
N50 Scaffolds 260,061 bp
Longest Scaffold 542,555 bp
Genome Size 5,098,994 bp
Protein Count 4,603
Coding Density 87.23%
GC Percentage 45.28%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM87741v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02204304
Country USA: Washington
Date 2018-08-20
Genbank Assembly Accession GCA_000877415.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,961
Refseq Category na
Seq Rel Date 2018/08/20
Spanned Gaps 0
Species Taxid 670
SSU Count 2
Submitter NOAA Northwest Fisheries Science Center
Taxid 1288781
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOOV00000000.2