Jannaschia aquimarina
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
NCBI Strain Identifiers GSW-M26
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 98.26%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 81
N50 Contigs 86,032 bp
Longest Contig 375,704 bp
Scaffold Count 81
N50 Scaffolds 86,032 bp
Longest Scaffold 375,704 bp
Genome Size 4,098,947 bp
Protein Count 4,092
Coding Density 90.29%
GC Percentage 66.45%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM87739v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03329626
Country South Korea: Southern Coast
Date 2015-2-18
Genbank Assembly Accession GCA_000877395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude None
Molecule Count 0
Protein Count 4,006
Refseq Category representative genome
Seq Rel Date 2015/02/18
Spanned Gaps 0
Species Taxid 935700
SSU Count 1
Submitter Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory
Taxid 935700
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JYFE00000000.1