Streptococcus suis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers V39F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294495.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 70
N50 Contigs 91,559 bp
Longest Contig 305,654 bp
Scaffold Count 61
N50 Scaffolds 169,568 bp
Longest Scaffold 379,834 bp
Genome Size 2,064,871 bp
Protein Count 1,988
Coding Density 87.90%
GC Percentage 41.12%
Ambiguous Bases N/A
GTDB representative GCA_000294495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Velvet_assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3234125
Country Viet Nam
Date 2015-2-17
Genbank Assembly Accession GCA_000877095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Brain
Latitude Longitude None
Molecule Count N/A
CDS Count 2,030
Refseq Category na
Seq Rel Date 2015/02/17
Spanned Gaps 9
Species Taxid 1307
SSU Count 2
Submitter UNIVERSITY OF CAMBRIDGE
Taxid 1307
Total Gap Length 498
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CEBX00000000.1