Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis
NCBI Strain Identifiers Java9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 5
N50 Contigs 4,672,688 bp
Longest Contig 4,672,688 bp
Scaffold Count 5
N50 Scaffolds 4,672,688 bp
Longest Scaffold 4,672,688 bp
Genome Size 4,830,559 bp
Protein Count 4,342
Coding Density 83.50%
GC Percentage 47.55%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM83490v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03216587
Country Indonesia
Date 2015-2-9
Genbank Assembly Accession GCA_000834905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rat
Latitude Longitude None
Molecule Count 5
CDS Count 4,522
Refseq Category na
Seq Rel Date 2015/02/09
Spanned Gaps 1
Species Taxid 632
SSU Count 6
Submitter Los Alamos National Laboratory
Taxid 632
Total Gap Length 800
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None