Pseudomonas_E viridiflava
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E viridiflava
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas viridiflava
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas viridiflava
NCBI Strain Identifiers LMCA8
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001642795.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 73
N50 Contigs 178,639 bp
Longest Contig 397,726 bp
Scaffold Count 73
N50 Scaffolds 178,639 bp
Longest Scaffold 397,726 bp
Genome Size 5,992,488 bp
Protein Count 5,373
Coding Density 87.86%
GC Percentage 59.27%
Ambiguous Bases N/A
GTDB representative GCA_001642795.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM83469v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03267840
Country USA: Lake Michigan College; Berrien County; Michigan
Date 2015-2-9
Genbank Assembly Accession GCA_000834695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 42.090114 N 86.393408 W
Molecule Count N/A
CDS Count 5,369
Refseq Category na
Seq Rel Date 2015/02/09
Spanned Gaps 0
Species Taxid 33069
SSU Count 6
Submitter University of Chicago
Taxid 33069
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXQO00000000.1