Variovorax paradoxus_F
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Variovorax; s__Variovorax paradoxus_F
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax paradoxus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax paradoxus
NCBI Strain Identifiers MEDvA23
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 138
N50 Contigs 103,570 bp
Longest Contig 358,288 bp
Scaffold Count 138
N50 Scaffolds 103,570 bp
Longest Scaffold 358,288 bp
Genome Size 6,906,509 bp
Protein Count 6,393
Coding Density 91.44%
GC Percentage 67.13%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM83465v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03267909
Country USA: Michigan State University Extension; Berrien County; Michigan
Date 2015-2-9
Genbank Assembly Accession GCA_000834655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 42.0927 N 86.356322 W
Molecule Count N/A
CDS Count 6,408
Refseq Category na
Seq Rel Date 2015/02/09
Spanned Gaps 0
Species Taxid 34073
SSU Count 1
Submitter University of Chicago
Taxid 34073
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXQQ00000000.1