Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis
NCBI Strain Identifiers Shasta
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 4
N50 Contigs 4,659,530 bp
Longest Contig 4,659,530 bp
Scaffold Count 4
N50 Scaffolds 4,659,530 bp
Longest Scaffold 4,659,530 bp
Genome Size 4,835,409 bp
Protein Count 4,332
Coding Density 83.44%
GC Percentage 47.63%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM83433v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03120838
Country USA: California
Date 2015-2-9
Genbank Assembly Accession GCA_000834335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human clinical
Latitude Longitude None
Molecule Count 4
CDS Count 4,528
Refseq Category na
Seq Rel Date 2015/02/09
Spanned Gaps 0
Species Taxid 632
SSU Count 6
Submitter Los Alamos National Laboratory
Taxid 632
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None