Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcystaceae; g__Rippkaea; s__Rippkaea sp000829235
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__unclassified Cyanobacteria; x__unclassified Cyanobacteria (miscellaneous); s__cyanobacterium endosymbiont of Epithemia turgida; x__cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko
NCBI Strain Identifiers ETSB Lake Yunoko
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 84.86%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 2,794,318 bp
Longest Contig 2,794,318 bp
Scaffold Count 1
N50 Scaffolds 2,794,318 bp
Longest Scaffold 2,794,318 bp
Genome Size 2,794,318 bp
Protein Count 1,918
Coding Density 56.32%
GC Percentage 33.41%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM82923v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00061037
Country Japan:Tochigi; Nikkoh; Lake Yunoko
Date 2014-7-23
Genbank Assembly Accession GCA_000829235.1
Genome Category Isolate
Genome Representation full
Isolate ETSB Lake Yunoko
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,758
Refseq Category representative genome
Seq Rel Date 2014/07/23
Spanned Gaps 0
Species Taxid 718217
SSU Count 2
Submitter Department of Biochemistry & Molecular Biology, Dalhousie University
Taxid 1228987
Total Gap Length 0
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None