Pseudomonas_E protegens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E protegens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas protegens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas protegens; x__Pseudomonas protegens Cab57
NCBI Strain Identifiers Cab57
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000397205.1)
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 1.51%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 6,827,892 bp
Longest Contig 6,827,892 bp
Scaffold Count 1
N50 Scaffolds 6,827,892 bp
Longest Scaffold 6,827,892 bp
Genome Size 6,827,892 bp
Protein Count 6,137
Coding Density 89.05%
GC Percentage 63.34%
Ambiguous Bases N/A
GTDB representative GCA_000397205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM82869v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00061024
Country None
Date 2014-4-11
Genbank Assembly Accession GCA_000828695.1
Genome Category Isolate
Genome Representation full
Isolate Cab57
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 6,159
Refseq Category na
Seq Rel Date 2014/04/11
Spanned Gaps 0
Species Taxid 380021
SSU Count 5
Submitter National Institute of Agrobiological Sciences
Taxid 1420599
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None