Capnocytophaga cynodegmi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__Capnocytophaga cynodegmi
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__Capnocytophaga cynodegmi
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Capnocytophaga; s__Capnocytophaga cynodegmi
NCBI Strain Identifiers Ccy74
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000379185.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 90
N50 Contigs 115,789 bp
Longest Contig 285,939 bp
Scaffold Count 90
N50 Scaffolds 115,789 bp
Longest Scaffold 285,939 bp
Genome Size 2,698,218 bp
Protein Count 2,391
Coding Density 89.07%
GC Percentage 34.39%
Ambiguous Bases N/A
GTDB representative GCA_000379185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ccyn74.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3180122
Country None
Date 2015-1-21
Genbank Assembly Accession GCA_000827735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,373
Refseq Category na
Seq Rel Date 2015/01/21
Spanned Gaps 0
Species Taxid 28189
SSU Count 1
Submitter BIOZENTRUM, UNIVERSITY OF BASEL
Taxid 28189
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDOG00000000.1