Undefined name (Failed Quality Check)
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas citri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; x__Xanthomonas citri group; s__Xanthomonas citri; x__Xanthomonas citri pv. citri
NCBI Strain Identifiers LE116-1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 89.95%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,312
N50 Contigs 7,738 bp
Longest Contig 38,499 bp
Scaffold Count 173
N50 Scaffolds 5,138,196 bp
Longest Scaffold 5,138,196 bp
Genome Size 5,438,845 bp
Protein Count 5,176
Coding Density 77.50%
GC Percentage 64.60%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name XACE116
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2827228
Country Mali
Date 2014-11-19
Genbank Assembly Accession GCA_000825545.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source C. aurantifolia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,357
Refseq Category na
Seq Rel Date 2014/11/19
Spanned Gaps 1140
Species Taxid 346
SSU Count 1
Submitter CIRAD
Taxid 611301
Total Gap Length 114000
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDHD00000000.1