Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas citri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas citri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; x__Xanthomonas citri group; s__Xanthomonas citri; x__Xanthomonas citri pv. citri
NCBI Strain Identifiers JK48
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002019225.1)
Genome Characteristics
CheckM Completeness 92.1%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 978
N50 Contigs 9,924 bp
Longest Contig 51,577 bp
Scaffold Count 92
N50 Scaffolds 5,006,515 bp
Longest Scaffold 5,006,515 bp
Genome Size 5,321,598 bp
Protein Count 4,827
Coding Density 79.06%
GC Percentage 64.63%
Ambiguous Bases N/A
GTDB representative GCA_002019225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name XACJK48
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2827235
Country Saudi Arabia
Date 2014-11-04
Genbank Assembly Accession GCA_000825425.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source C. aurantifolia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,074
Refseq Category na
Seq Rel Date 2014/11/04
Spanned Gaps 887
Species Taxid 346
SSU Count 1
Submitter CIRAD
Taxid 611301
Total Gap Length 88700
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDAJ00000000.1