Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus ruber
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus ruber
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus ruber
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001894945.1)
Genome Characteristics
CheckM Completeness 98.87%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 115
N50 Contigs 134,859 bp
Longest Contig 331,488 bp
Scaffold Count 46
N50 Scaffolds 432,032 bp
Longest Scaffold 1,076,730 bp
Genome Size 5,997,570 bp
Protein Count 5,602
Coding Density 90.13%
GC Percentage 70.22%
Ambiguous Bases N/A
GTDB representative GCA_001894945.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name BDK_PRJEB6917_v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2708319
Country None
Date 2014-10-16
Genbank Assembly Accession GCA_000824945.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,503
Refseq Category na
Seq Rel Date 2014/10/16
Spanned Gaps 69
Species Taxid 1830
SSU Count 2
Submitter Genoscope CEA
Taxid 1830
Total Gap Length 6900
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCSD00000000.1