Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers Liverpool Epidemic Strain
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 79
N50 Contigs 389,190 bp
Longest Contig 665,352 bp
Scaffold Count 79
N50 Scaffolds 389,190 bp
Longest Scaffold 665,352 bp
Genome Size 6,460,085 bp
Protein Count 6,009
Coding Density 89.77%
GC Percentage 66.46%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name LES_CF_sputum_CF03_contigs_18_a1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2732154
Country United Kingdom
Date 2015-1-9
Genbank Assembly Accession GCA_000824065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Portion of Sputum
Latitude Longitude 53.4 N 3 W
Molecule Count N/A
CDS Count 6,136
Refseq Category na
Seq Rel Date 2015/01/09
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter UNIVERSITY OF LIVERPOOL
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCOL00000000.1