Clostridium_AA polynesiense
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_AA; s__Clostridium_AA polynesiense
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium polynesiense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium polynesiense
NCBI Strain Identifiers MS1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.39%
CheckM Contamination 2.35%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 161
N50 Contigs 36,480 bp
Longest Contig 206,486 bp
Scaffold Count 161
N50 Scaffolds 36,480 bp
Longest Scaffold 206,486 bp
Genome Size 3,560,738 bp
Protein Count 3,587
Coding Density 87.02%
GC Percentage 34.00%
Ambiguous Bases 3
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Clostridium polynesiense str. MS1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2769924
Country None
Date 2014-9-18
Genbank Assembly Accession GCA_000820705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,452
Refseq Category representative genome
Seq Rel Date 2014/09/18
Spanned Gaps 0
Species Taxid 1325933
SSU Count 1
Submitter ebi
Taxid 1325933
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CCXI00000000.1