Pseudomonas_E batumici
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E batumici
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas batumici
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas batumici
NCBI Strain Identifiers UCM B-321
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 95.3%
CheckM Contamination 2.32%
CheckM Strain Heterogeneity 55.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 126
N50 Contigs 133,994 bp
Longest Contig 468,112 bp
Scaffold Count 126
N50 Scaffolds 133,994 bp
Longest Scaffold 468,112 bp
Genome Size 6,606,796 bp
Protein Count 5,873
Coding Density 88.77%
GC Percentage 61.79%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM82051v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03273282
Country Georgia: Batumi; the Black Sea coast of the Caucasus
Date 2015-1-16
Genbank Assembly Accession GCA_000820515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source eucalyptus rhizosphere
Latitude Longitude None
Molecule Count N/A
CDS Count 5,920
Refseq Category na
Seq Rel Date 2015/01/16
Spanned Gaps 0
Species Taxid 226910
SSU Count 2
Submitter Institute of Microbiology and Virology
Taxid 226910
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JXDG00000000.1