Noviherbaspirillum autotrophicum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Noviherbaspirillum; s__Noviherbaspirillum autotrophicum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Noviherbaspirillum; s__Noviherbaspirillum autotrophicum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Noviherbaspirillum; s__Noviherbaspirillum autotrophicum
NCBI Strain Identifiers TSA66
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 100.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 77
N50 Contigs 343,996 bp
Longest Contig 646,447 bp
Scaffold Count 28
N50 Scaffolds 5,132,512 bp
Longest Scaffold 5,132,512 bp
Genome Size 5,384,605 bp
Protein Count 5,032
Coding Density 87.42%
GC Percentage 59.91%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM81839v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03267208
Country Japan: Tokyo
Date 2015-1-15
Genbank Assembly Accession GCA_000818395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rice paddy soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,018
Refseq Category representative genome
Seq Rel Date 2015/01/15
Spanned Gaps 49
Species Taxid 709839
SSU Count 5
Submitter Hokkaido University
Taxid 709839
Total Gap Length 490
Translation Table 11
tRNA Count (total) 61
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JWJG00000000.1