Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers 823TEZ1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001591145.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 2
23S Count 7
tRNA Count 19
Contig Count 339
N50 Contigs 286,978 bp
Longest Contig 864,777 bp
Scaffold Count 337
N50 Scaffolds 300,435 bp
Longest Scaffold 864,777 bp
Genome Size 5,757,431 bp
Protein Count 5,266
Coding Density 86.48%
GC Percentage 44.93%
Ambiguous Bases N/A
GTDB representative GCA_001591145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM81837v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00019140
Country Japan:Taisei
Date 2015-1-9
Genbank Assembly Accession GCA_000818375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,246
Refseq Category na
Seq Rel Date 2015/01/09
Spanned Gaps 2
Species Taxid 669
SSU Count 61
Submitter University of Miyazaki
Taxid 669
Total Gap Length 79
Translation Table 11
tRNA Count (total) 116
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBKY00000000.1