Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio campbellii
NCBI Strain Identifiers 051011E
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 223
N50 Contigs 495,928 bp
Longest Contig 877,497 bp
Scaffold Count 219
N50 Scaffolds 516,820 bp
Longest Scaffold 877,497 bp
Genome Size 5,736,403 bp
Protein Count 5,137
Coding Density 86.49%
GC Percentage 45.41%
Ambiguous Bases 0
GTDB representative GCF_002163755.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM81829v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00019130
Country Japan:Miyazaki
Date 2015-1-9
Genbank Assembly Accession GCA_000818295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,209
Refseq Category na
Seq Rel Date 2015/01/09
Spanned Gaps 4
Species Taxid 680
SSU Count 49
Submitter University of Miyazaki
Taxid 680
Total Gap Length 256
Translation Table 11
tRNA Count (total) 130
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBKU00000000.1