Actinobacillus lignieresii
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Actinobacillus; s__Actinobacillus lignieresii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Actinobacillus; s__Actinobacillus pleuropneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Actinobacillus; s__Actinobacillus pleuropneumoniae
NCBI Strain Identifiers 518
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900444945.1)
Genome Characteristics
CheckM Completeness 98.64%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 48
N50 Contigs 108,382 bp
Longest Contig 239,315 bp
Scaffold Count 48
N50 Scaffolds 108,382 bp
Longest Scaffold 239,315 bp
Genome Size 2,275,540 bp
Protein Count 2,372
Coding Density 88.52%
GC Percentage 41.12%
Ambiguous Bases N/A
GTDB representative GCA_900444945.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81748v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03162175
Country Brazil: Vicosa Country; State of Minas Gerais
Date 2015-1-12
Genbank Assembly Accession GCA_000817485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lungs of sick pig
Latitude Longitude 20.753889 S 42.881944 W
Molecule Count N/A
CDS Count 2,160
Refseq Category na
Seq Rel Date 2015/01/12
Spanned Gaps 0
Species Taxid 715
SSU Count 1
Submitter LNCC
Taxid 715
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSVZ00000000.1