Pantoea agglomerans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea agglomerans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea agglomerans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; x__Pantoea agglomerans group; s__Pantoea agglomerans
NCBI Strain Identifiers LMAE-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001598475.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 11
23S Count 19
tRNA Count 20
Contig Count 155
N50 Contigs 152,429 bp
Longest Contig 467,377 bp
Scaffold Count 155
N50 Scaffolds 152,429 bp
Longest Scaffold 467,377 bp
Genome Size 4,981,165 bp
Protein Count 4,635
Coding Density 85.93%
GC Percentage 55.15%
Ambiguous Bases N/A
GTDB representative GCA_001598475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81407v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03262811
Country Chile: Puerto Montt
Date 2015-1-2
Genbank Assembly Accession GCA_000814075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sediment seabed next to the discharge of tannery localizated in Tenglo channel
Latitude Longitude None
Molecule Count N/A
CDS Count 4,652
Refseq Category na
Seq Rel Date 2015/01/02
Spanned Gaps 0
Species Taxid 549
SSU Count 17
Submitter Universidad de Santiago de Chile
Taxid 549
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWLQ00000000.1