Novosphingobium sp000813185
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__Novosphingobium sp000813185
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Novosphingobium; s__Novosphingobium sp. MBES04
NCBI Strain Identifiers MBES04
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.0%
CheckM Contamination 1.39%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 124
N50 Contigs 175,572 bp
Longest Contig 431,693 bp
Scaffold Count 33
N50 Scaffolds 3,129,454 bp
Longest Scaffold 3,129,454 bp
Genome Size 5,361,448 bp
Protein Count 4,988
Coding Density 85.79%
GC Percentage 65.38%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM81318v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00019870
Country Japan:Shizuoka; Suruga Bay
Date 2014-12-19
Genbank Assembly Accession GCA_000813185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sunken wood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,731
Refseq Category na
Seq Rel Date 2014/12/19
Spanned Gaps 91
Species Taxid 1206458
SSU Count 1
Submitter Japan Agency for Marine-Earth Science and Technology
Taxid 1206458
Total Gap Length 170234
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBNP00000000.1