Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EC2_6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 160
N50 Contigs 132,088 bp
Longest Contig 329,979 bp
Scaffold Count 160
N50 Scaffolds 132,088 bp
Longest Scaffold 329,979 bp
Genome Size 4,898,283 bp
Protein Count 4,666
Coding Density 88.43%
GC Percentage 50.54%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81278v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03256250
Country Malaysia: Melaka
Date 2014-12-31
Genbank Assembly Accession GCA_000812785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Intestine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,017
Refseq Category na
Seq Rel Date 2014/12/31
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Malaya
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWKM00000000.1