Escherichia coli_C
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EC2_2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003018335.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 145
N50 Contigs 98,394 bp
Longest Contig 338,098 bp
Scaffold Count 145
N50 Scaffolds 98,394 bp
Longest Scaffold 338,098 bp
Genome Size 5,052,014 bp
Protein Count 4,718
Coding Density 88.36%
GC Percentage 50.11%
Ambiguous Bases N/A
GTDB representative GCA_003018335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81276v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03256248
Country Malaysia: Selangor
Date 2014-12-31
Genbank Assembly Accession GCA_000812765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Heart and Liver
Latitude Longitude None
Molecule Count N/A
CDS Count 5,097
Refseq Category na
Seq Rel Date 2014/12/31
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Malaya
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWKK00000000.1