Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EC4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 237
N50 Contigs 106,398 bp
Longest Contig 369,349 bp
Scaffold Count 237
N50 Scaffolds 106,398 bp
Longest Scaffold 369,349 bp
Genome Size 5,205,271 bp
Protein Count 5,006
Coding Density 87.67%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81232v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03256211
Country Malaysia: Selangor
Date 2014-12-31
Genbank Assembly Accession GCA_000812325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Heart and Liver
Latitude Longitude None
Molecule Count N/A
CDS Count 5,427
Refseq Category na
Seq Rel Date 2014/12/31
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Malaya
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWKE00000000.1