Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EC15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 188
N50 Contigs 83,621 bp
Longest Contig 231,021 bp
Scaffold Count 188
N50 Scaffolds 83,621 bp
Longest Scaffold 231,021 bp
Genome Size 4,715,428 bp
Protein Count 4,477
Coding Density 88.06%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM81223v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03256242
Country Malaysia: Selangor
Date 2014-12-31
Genbank Assembly Accession GCA_000812235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vulval swab
Latitude Longitude None
Molecule Count N/A
CDS Count 4,797
Refseq Category na
Seq Rel Date 2014/12/31
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Malaya
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWKH00000000.1