Pectobacterium brasiliense
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pectobacterium; s__Pectobacterium brasiliense
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum; sb__Pectobacterium carotovorum subsp. brasiliense
NCBI Strain Identifiers S2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294535.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 5
23S Count 6
tRNA Count 19
Contig Count 41
N50 Contigs 234,442 bp
Longest Contig 619,981 bp
Scaffold Count 37
N50 Scaffolds 261,972 bp
Longest Scaffold 619,981 bp
Genome Size 4,836,921 bp
Protein Count 4,394
Coding Density 86.46%
GC Percentage 52.03%
Ambiguous Bases 7
GTDB representative GCA_000294535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM80837v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03252599
Country China: Beijing
Date 2014-12-29
Genbank Assembly Accession GCA_000808375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source infected leaves
Latitude Longitude None
Molecule Count N/A
CDS Count 4,398
Refseq Category na
Seq Rel Date 2014/12/29
Spanned Gaps 4
Species Taxid 554
SSU Count 5
Submitter Beijing Academy of Agriculture and Forestry Sciences
Taxid 180957
Total Gap Length 398
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUJF00000000.1