Flammeovirga pacifica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Flammeovirgaceae; g__Flammeovirga; s__Flammeovirga pacifica
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Flammeovirgaceae; g__Flammeovirga; s__Flammeovirga pacifica
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Flammeovirgaceae; g__Flammeovirga; s__Flammeovirga pacifica
NCBI Strain Identifiers WPAGA1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.51%
CheckM Contamination 1.62%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 4
tRNA Count 18
Contig Count 65
N50 Contigs 445,839 bp
Longest Contig 813,383 bp
Scaffold Count 21
N50 Scaffolds 4,904,383 bp
Longest Scaffold 4,904,383 bp
Genome Size 6,610,326 bp
Protein Count 4,995
Coding Density 87.70%
GC Percentage 32.90%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM80785v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105797
Country Pacific Ocean: western region near China
Date 2016-10-28
Genbank Assembly Accession GCA_000807855.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude 19.3 N 157.24 E
Molecule Count N/A
CDS Count 4,925
Refseq Category representative genome
Seq Rel Date 2016/10/28
Spanned Gaps 44
Species Taxid 915059
SSU Count 1
Submitter 85303
Taxid 915059
Total Gap Length 64188
Translation Table 11
tRNA Count (total) 82
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JRYR00000000.2