Borrelia miyamotoi
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Borreliales; f__Borreliaceae; g__Borrelia; s__Borrelia miyamotoi
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Borreliaceae; g__Borrelia; s__Borrelia miyamotoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Borreliaceae; g__Borrelia; s__Borrelia miyamotoi
NCBI Strain Identifiers CT14D4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000445425.4)
Genome Characteristics
CheckM Completeness 98.9%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 1
N50 Contigs 907,293 bp
Longest Contig 907,293 bp
Scaffold Count 1
N50 Scaffolds 907,293 bp
Longest Scaffold 907,293 bp
Genome Size 907,293 bp
Protein Count 830
Coding Density 92.06%
GC Percentage 28.72%
Ambiguous Bases N/A
GTDB representative GCA_000445425.4
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM80729v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03255733
Country USA: Connecticut; Tolland County
Date 2014-12-23
Genbank Assembly Accession GCA_000807295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude 41.80 N 72.31 W
Molecule Count 1
CDS Count 808
Refseq Category na
Seq Rel Date 2014/12/23
Spanned Gaps 0
Species Taxid 47466
SSU Count 1
Submitter University of California Irvine
Taxid 47466
Total Gap Length 0
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None