Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers KT-0181
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 115
N50 Contigs 102,572 bp
Longest Contig 233,222 bp
Scaffold Count 115
N50 Scaffolds 102,572 bp
Longest Scaffold 233,222 bp
Genome Size 4,375,585 bp
Protein Count 4,122
Coding Density 90.43%
GC Percentage 65.57%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM80374v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03175163
Country South Korea: Changwon
Date 2014-12-18
Genbank Assembly Accession GCA_000803745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tuberculosis patient
Latitude Longitude 35.13 N 128.40 E
Molecule Count N/A
CDS Count 4,265
Refseq Category na
Seq Rel Date 2014/12/18
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter International Tuberculosis Research Center
Taxid 1773
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTFM00000000.1