Coprobacter secundus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Coprobacteraceae; g__Coprobacter; s__Coprobacter secundus
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Barnesiellaceae; g__Coprobacter; s__Coprobacter secundus
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Barnesiellaceae; g__Coprobacter; s__Coprobacter secundus
NCBI Strain Identifiers 177
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 234,174 bp
Longest Contig 498,275 bp
Scaffold Count 45
N50 Scaffolds 234,174 bp
Longest Scaffold 498,275 bp
Genome Size 4,138,744 bp
Protein Count 3,190
Coding Density 89.81%
GC Percentage 37.82%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM80310v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03196437
Country Russia: Moscow
Date 2014-12-17
Genbank Assembly Accession GCA_000803105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source human feces
Latitude Longitude None
Molecule Count N/A
CDS Count 3,153
Refseq Category representative genome
Seq Rel Date 2014/12/17
Spanned Gaps 0
Species Taxid 1501392
SSU Count 1
Submitter Pirogov Russian National Research Medical University
Taxid 1501392
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JTDA00000000.1