Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers 1198;1198/04;04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.16%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 60
N50 Contigs 55,350 bp
Longest Contig 146,281 bp
Scaffold Count 57
N50 Scaffolds 61,070 bp
Longest Scaffold 146,281 bp
Genome Size 1,618,345 bp
Protein Count 1,532
Coding Density 91.03%
GC Percentage 38.95%
Ambiguous Bases N/A
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM80246v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03153477
Country None
Date 2014-12-16
Genbank Assembly Accession GCA_000802465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,566
Refseq Category na
Seq Rel Date 2014/12/16
Spanned Gaps 3
Species Taxid 210
SSU Count 1
Submitter National Institute of Health, Portugal
Taxid 210
Total Gap Length 30
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSXT00000000.1