Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers 03;1089/03;1089
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 65
N50 Contigs 45,702 bp
Longest Contig 125,177 bp
Scaffold Count 62
N50 Scaffolds 49,733 bp
Longest Scaffold 125,177 bp
Genome Size 1,587,159 bp
Protein Count 1,540
Coding Density 91.02%
GC Percentage 39.14%
Ambiguous Bases N/A
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM80245v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03151583
Country None
Date 2014-12-16
Genbank Assembly Accession GCA_000802455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,556
Refseq Category na
Seq Rel Date 2014/12/16
Spanned Gaps 3
Species Taxid 210
SSU Count 1
Submitter National Institute of Health, Portugal
Taxid 210
Total Gap Length 30
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSUY00000000.1