Pseudomonas_E fluorescens_AH
Isolate HQ 5S/16S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E fluorescens_AH
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers AU14705
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 4
23S Count 0
tRNA Count 19
Contig Count 164
N50 Contigs 185,471 bp
Longest Contig 815,346 bp
Scaffold Count 97
N50 Scaffolds 815,658 bp
Longest Scaffold 1,353,163 bp
Genome Size 6,107,089 bp
Protein Count 5,507
Coding Density 89.12%
GC Percentage 59.91%
Ambiguous Bases 91
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name PfAU14705
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03092897
Country USA
Date 2014-12-16
Genbank Assembly Accession GCA_000801895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 33.4667 N 81.9667 W
Molecule Count N/A
CDS Count 5,554
Refseq Category na
Seq Rel Date 2014/12/16
Spanned Gaps 67
Species Taxid 294
SSU Count 4
Submitter University of Michigan, Ann Arbor
Taxid 294
Total Gap Length 6700
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRYA00000000.1