Pseudomonas_E lurida
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E lurida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers AU10973
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002563895.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 58
N50 Contigs 303,977 bp
Longest Contig 749,818 bp
Scaffold Count 23
N50 Scaffolds 732,798 bp
Longest Scaffold 1,009,305 bp
Genome Size 6,131,111 bp
Protein Count 5,553
Coding Density 89.20%
GC Percentage 60.84%
Ambiguous Bases 108
GTDB representative GCA_002563895.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PfAU10973
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03092887
Country USA
Date 2014-12-16
Genbank Assembly Accession GCA_000801835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 40.7500 N 111.8833 W
Molecule Count N/A
CDS Count 5,564
Refseq Category na
Seq Rel Date 2014/12/16
Spanned Gaps 35
Species Taxid 294
SSU Count 2
Submitter University of Michigan, Ann Arbor
Taxid 294
Total Gap Length 3501
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRXV00000000.1