Pseudomonas_E rhodesiae
Isolate HQ 5S/16S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E rhodesiae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers AU2989
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900105575.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 1.13%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 0
tRNA Count 19
Contig Count 95
N50 Contigs 196,803 bp
Longest Contig 548,777 bp
Scaffold Count 49
N50 Scaffolds 260,058 bp
Longest Scaffold 647,359 bp
Genome Size 6,207,684 bp
Protein Count 5,620
Coding Density 88.95%
GC Percentage 60.40%
Ambiguous Bases 226
GTDB representative GCA_900105575.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PfAU2989
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03086631
Country USA
Date 2014-12-16
Genbank Assembly Accession GCA_000801775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 41.7627 N 72.6743 W
Molecule Count N/A
CDS Count 5,656
Refseq Category na
Seq Rel Date 2014/12/16
Spanned Gaps 46
Species Taxid 294
SSU Count 2
Submitter University of Michigan, Ann Arbor
Taxid 294
Total Gap Length 4600
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRXT00000000.1