Listeria monocytogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes; x__Listeria monocytogenes SHL004
NCBI Strain Identifiers SHL004
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900187225.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 17
N50 Contigs 579,300 bp
Longest Contig 620,346 bp
Scaffold Count 17
N50 Scaffolds 579,300 bp
Longest Scaffold 620,346 bp
Genome Size 3,006,262 bp
Protein Count 2,992
Coding Density 89.80%
GC Percentage 37.82%
Ambiguous Bases N/A
GTDB representative GCA_900187225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name L_monocytogenes_SHL004_v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03265956
Country China: Shanghai
Date 2014-12-15
Genbank Assembly Accession GCA_000801375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 3,031
Refseq Category na
Seq Rel Date 2014/12/15
Spanned Gaps 0
Species Taxid 1639
SSU Count 1
Submitter University of Maryland, College Park
Taxid 1302624
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APID00000000.1